How to adjust the branch lengths of a dendrogram in Matplotlib?

MatplotlibPythonData Visualization

To adjust the branch length of a dendrogram in Matplotlib, we can take the following steps −

  • Set the figure size and adjust the padding between and around the subplots.

  • Draw random samples (a and b) from a multivariate normal distribution.

  • Join a sequence of arrays along an existing axis, using concatenate() method.

  • Perform hierarchical/agglomerative clustering.

  • Create a new figure or activate an existing figure using figure() method.

  • Add an axes to the figure as part of a subplot arrangement.

  • Plot the hierarchical clustering as a dendrogram using dendrogram() method.

  • To display the figure, use show() method.


from matplotlib import pyplot as plt
from scipy.cluster.hierarchy import dendrogram, linkage
import numpy as np
plt.rcParams["figure.figsize"] = [7.50, 3.50]
plt.rcParams["figure.autolayout"] = True
a = np.random.multivariate_normal([0, 10], [[3, 1], [1, 4]], size=[2, ])
b = np.random.multivariate_normal([0, 10], [[3, 1], [1, 4]], size=[3, ])
X = np.concatenate((a, b), )
Z = linkage(X)
fig = plt.figure()
ax = fig.add_subplot(1, 1, 1)
dendrogram(Z, ax=ax)


Published on 03-Jun-2021 12:32:37